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Htftarget database

WebApr 1, 2024 · b Prediction of transcription factor binding site of hTFTARGET database. c Prediction of transcription factor binding site of HumanTFDB database. Rights and permissions. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and … WebNov 16, 2024 · In this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7,190 ChIP-Seq samples of 659 TFs and high …

Correlation of the transcription factors IRF4 and BACH2 with the ...

WebOct 3, 2024 · The hTFtarget database is a large-scale database collecting most human transcription factors and their experimentally confirmed target genes in multiple organs . In our study, the transcription factors of GSTM2 in colon tissue was searched using the hTFtarget database. WebApr 1, 2024 · The HOCOMOCO [22], JASPAR [23], TRANSFAC v2024 [24], and TFBSbank [31] databases focus on the collection and discovery of the motif profiles for TFBSs, … bridget thomas thomasville ga https://lgfcomunication.com

FOXA1 Leads to Aberrant Expression of SIX4 Affecting Cervical ... - Hindawi

WebSep 21, 2024 · Second, to validate the TF-gene edge in the TRIPOD-identified trios, we referred to knockTF (Feng et al., 2024), a TF knockdown/knockout gene expression database, and hTFtarget (Zhang et al., 2024), a database of known TF regulatory targets. Specifically, in knockTF, we found seven TF knockdown/knockout RNA-seq experiments … WebApr 20, 2024 · To explore the pathways through which FOXA1 acts on CC, the hTFtarget database was queried. Among all the downstream genes of FOXA1, we found that SIX4 had the largest log2FC value in the GSE63514 database, so we selected SIX4 as the downstream target of FOXA1 in this study (Figure 3(a)). WebFeb 1, 2024 · TF SPI1 Regulates the Expression of ADH1B, MYH11, and PLN in Endometriotic Cells. To identify a common upstream regulator of ADH1B, MYH11, and PLN, the hTFtarget database was used to predict the TFs of the three genes. Five TFs, AR, FOXA1, MAFF, MAFK, and SPI1 were identified as common TFs ( Figure 3 A). can walmart hire 15 year olds

hTFtarget: A Comprehensive Database for Regulations …

Category:Tfcancer: a manually curated database of transcription factors ...

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Htftarget database

hTFtarget: A Comprehensive Database for Regulations of

WebApr 1, 2024 · b Prediction of transcription factor binding site of hTFTARGET database. c Prediction of transcription factor binding site of HumanTFDB database. 41016_2024_276_MOESM2_ESM.jpg (1.8M) GUID: 894234C9-2A50-4FEE-B300-CC2B7CB3B639. Data Availability Statement. All data relevant to the study are included … WebIn this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high-confidence binding …

Htftarget database

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WebSep 12, 2024 · Finally, a transcription factor-key gene network was constructed based on ChEA3 platform and hTFtarget database, and a miRNA-key gene network was constructed using starBase and the multimiR R package. WebW3Schools offers free online tutorials, references and exercises in all the major languages of the web. Covering popular subjects like HTML, CSS, JavaScript, Python, SQL, Java, …

WebJan 19, 2024 · The bioinformatics databases (hTFtarget, starBase and TargetScan) were used to predict the upstream and downstream regulatory molecules of E2F7. Then the binding relationships between E2F7 and regulatory molecules were verified by ChIP and dual-luciferase reporter assay. qRT-PCR and western blot were used to detect the … WebOct 14, 2024 · The hTFtarget database is a transcription factor database that includes a significant number of human chromatin immunoprecipitation (ChIP) sequencing data sets (7,190 experimental samples) and 659 identified transcription factors. The hTFtarget database was used to find the seven possible upstream transcription factors of …

WebMay 26, 2024 · To date, several TF databases have been developed to explore this information. For example, TF-target gene regulation databases like TRRUST ( Han et al. … WebFor hTFtarget, we obtained the blood-specific TFs for each highly variable gene and calculated the gene-specific precision-recall rates—TRIPOD is more sensitive compared with marginal association testing, although both suffered from inflated “false positives,” which can also be due to the low sensitivity in the in silico calls by ...

WebApr 1, 2024 · The HOCOMOCO , JASPAR , TRANSFAC v2024 , and TFBSbank databases focus on the collection and discovery of the motif profiles for TFBSs, while TRRUST …

WebW3Schools offers free online tutorials, references and exercises in all the major languages of the web. Covering popular subjects like HTML, CSS, JavaScript, Python, SQL, Java, … can walmart hold itemshttp://bioinfo.life.hust.edu.cn/hTFtarget#!/ bridget tierney brownWebIn this study, we developed a database named hTFtarget, which curated a comprehensive repertoire of TF-target relationships for human and offered an almost one-stop solution … bridget tierney crnpWebhTFtarget整合了699个转录因子的高可信度DNA结合序列，其中包含699个TF的2737个TFBS基序。. hTFtarget采用指数衰减的BETA模型量化转录因子对靶基因的调控能力， … can walmart layaway payments be made onlinebridget tighe mcgrathWebAug 28, 2024 · The hTFtarget database was used to predict the upstream transcription factors of HAS2-AS1 and the JASPAR website was used to predict the binding sites of … can walmart match paint colorWeb(C) According to the hTFtarget database, the first four TFs of both S100A12 and the 10 interacted genes were found. (D) GO and KEGG pathway analysis of both S100A12 and the 10 interacted genes. can walmart look up purchases by bank card